Pandda crystallography

The PanDDA (Pan-Dataset Density Analysis) method identifies “changed-state” signal (e.g. binding ligands) in crystallographic datasets by contrasting putative changed-state datasets against a series of “ground-state” (e.g. unbound) datasets; this identifies regions that are significantly different to the ground-state.

How to analyze crystallographic data using pandda?

The analysis of the crystallographic data is performed with pandda

analyse

The changed-state of the crystal can then be modelled with pandda

inspect (using coot) pandda export merges the models of the bound and unbound states of the crystal to create multi-state ensembles, and prepares the structures for refinement

What is Pan-dataset density analysis (pandda)?

Our new method—Pan-Dataset Density Analysis (PanDDA)—comprises: the characterization of a set of related crystallographic data sets of the same crystal form; the identification of (binding) events; and the subtraction of ground state density to reveal clear density for events

What is the pandda method?

Since changed states are invariably present at sub-unitary occupancy in the crystal, the PanDDA method includes further steps to deconvolute the superposition of crystal states, revealing generally clear density for the changed state of the crystal and simplifying modelling

The PanDDA (Pan-Dataset Density Analysis) method identifies “changed-state” signal (e.g. binding ligands) in crystallographic datasets by contrasting putative changed-state datasets against a series of “ground-state” (e.g. unbound) datasets; this identifies regions that are significantly different to the ground-state.

Categories

Crystallographic patterns
Patterson crystallography
Parrot crystallography
Crystallographic packing efficiency
Crystallographic packing fraction
Crystallography diffraction pattern
Raman crystallography
Radio crystallography
Racemic crystallography
Crystallographic radii
Rupp crystallography
Crystallography axial ratio
X ray crystallography slideshare
X ray crystallography principle
Sad crystallography
Sapphire crystallography
Say crystallography
Protein crystallography salt
X ray crystallography sample preparation
Introduction to crystallography sands