Inter API Livret•GB
IN THE DATABASES? Version. Changes. Changes. Database number to thesaurus to database old new. Taxons. Notes. Identification. Additional tests. API 20 E.
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API & ID 32 IDENTIFICATION DATABASES
The API® ID 32 and rapid ID 32 database update takes into account: • the evolution of international taxonomy. • the description of the new bacterial
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Inter API Livret•GB - bioMérieux Clinical Diagnostics
Inter API Livret•GB from diagnosis 01-06 / 002GB99103A / This document is not legally binding bioMérieux reserves the right to modify specifications without noti the seeds of better health ce BIOMÉRIEUX the blue logo and API are registered and protected trademarks belonging to bioMérieux SA or one of its subsidiaries bioMérieux SA RCS
REST API Developer Guide - IBM
This Developer Guide contains several RESTful API interaction examples that demonstrate basic functions such as getting a session ID assigning a VM and starting a job Additionally this guide discusses RESTful API conventions and security concepts The material in the Developer Guide or any accompanying publication has not been
the seeds of better health01-06 / 002GB99103A / This document is not legally binding. bioMérieux reserves the right to modify specifications without notice
BIOMÉRIEUX, the blue logo and API are registered and protected trademarks belonging to bioMérieux SA or one of its subsidiaries
bioMérieux SA RCS Lyon 673 620 399 /Photos: C. GANET, Getty Images / Printed in France / T.L. McCANN Santé Lyon/ RCS Lyon B 398 160 242bioMérieux sa
69280 Marcy l'Etoile
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Tel. : 33(0)4 78 87 20 00
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www.biomerieux.comAPI & ID 32
IDENTIFICATION DATABASESthe reference
BIOMÉRIEUXAPI
ID 32IDENTIFICATION DATABASES
descriptions of P. lautusand of P. peoriae. (1996) Int. J. Syst. Bacteriol., 46, 988-1003.53 •ASH (C.), PRIEST (F.G.) and COLLINS (M.D.): Molecular identification of rRNA
group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. (1993)Antonie van Leeuwenhoek, 64, 253-260.
54 •DEVRIESE (L.A.), RIEGEL (P.), HOMMEZ (J.), VANEECHOUTTE (M.), DE BAERE (T.)
and HAESEBROUCK (F.): Identification of Corynebacterium glucuronolyticumstrains from the urogenital tract of humans and pigs. (2000) J. Clin. Microbiol., 38, 4657-4659.55 •POHL (S.), BERTSCHINGER (H.U.), FREDERIKSEN (W.) and MANNHEIM (W.):
Transfer of Haemophilus pleuropneumoniaeand the Pasteurella haemolytica-like organism causing porcine necrotic pleuropneumonia to the genus Actinobacillus (Actinobacillus pleuropneumoniaecomb. nov.) on the basis of phenotypic and deoxyribonucleic acid relatedness. (1983) Int. J. Syst. Bacteriol., 33, 510-514.56 •BIBERSTEIN (E.L.) and WHITE (D.C.): A proposal for the establishment of two new
Haemophilusspecies. (1969) Journal of Medical Microbiology, 2, 75-7857 •PRIEST (F.G.), GOODFELLOW (M.) and TODD (C.): A numerical classification of
the genus Bacillus. (1988) J. Gen. Microbiol., 134, 1847-188258 •SNEATH (P.H.A.), MAIR (N.S.), SHARPE (M.E.) and HOLT (J.G.) Bergey's Manual of
Systematic Bacteriology. Ninth Edition. (1986) Williams & Wilkins Co., Baltimore, Md, 2.59 •WILLIAMS (A.M.), FARROW (J.A.E.) and COLLINS (M.D.): Reverse transcriptase
sequencing of 16s ribosomal RNA from Streptococcus cecorum. (1989) Lett. Appl.Microbiol., 8, 185-189.
60 •BRENNER (D.J.), GRIMONT (P.A.D.), STEIGERWALT (A.G.), FANNING (G.R.),
AGERON (E.) and RIDDLE (C.F.): Classification of citrobacteriaby DNA hybridization: designation of Citrobacter farmerisp. nov., Citrobacter youngaesp. nov., Citrobacter braakiisp. nov., Citrobacter werkmaniisp. nov., Citrobacter sedlakiisp. nov., and three unnamed Citrobactergenomospecies. (1993) Int. J. Syst. Bacteriol., 43, 645-658.61 •BØVRE (K.): Proposal to divide the genus MoraxellaLwoff 1939 emend. Henriksen
and Bøvre 1968 into two subgenera - subgenus Moraxella(Lwoff 1939) Bøvre 1979 and subgenus Branhamella(Catlin 1970) Bøvre 1979. (1979) Int. J. Syst. Bacteriol., 29,403-406.
62 •HEYNDRICKX (M.), LEBBE (L.), KERSTERS (K.), DE VOS (P.), FORSYTH (G.) and
LOGAN (N.A.): Virgibacillus: a new genus to accommodate Bacillus pantothenticus (Proom and Knight 1950). Emended description of Virgibacillus pantothenticus. (1998)Int. J. Syst. Bacteriol., 48, 99-106
63 •TINDALL (B.J.), GRIMONT (P.A.D.), GARRITY (G.M.) and EUZÉBY (J.P.):
Nomenclature and taxonomy of the genus Salmonella. (2005) Int. J. Syst. Evol.Microbiol., 55, 521-524.
64 •DE VOS (P.), TRÜPER (H.G.) and TINDALL (B.J.): Judicial Commission of the
International Committee on Systematics of Prokaryotes, Xth International (IUMS) Congress of Bacteriology and Applied Microbiology. Minutes of the meetings, 28, 29 and 31 July and 1 August 2002, Paris, France. (2005) Int. J. Syst. Evol. Microbiol., 55,525-532.
65 •LOGAN (N.A.), & TURNBULL (P.C.B.) (2003) Bacillus and related genera. In
Manual of Clinical Microbiology, 8 th edn, Vol. 1, pp. 445-460. Edited by P. R. Murray, E. J. Baron, J. H. Jorgensen, M. A. Pfaller & R. H. Yolken. American Society forMicrobiology, Washington D.C.
57Our special thanks go to Professor Jean Freney from the Microbiology Laboratory at Edouard Herriot Hospital in Lyons (France) and Professor Niall Logan of Glasgow Caledonian University (Scotland) for their helpful advice and careful proof-reading of this technical booklet.
To keep up with changing infectious pathologies:
•Emergence of new species •Acquisition of new biological data •Development of bacterial resistance •Increasing prevalence of nosocomial infections and the need for precise epidemiological monitoring The API and ID 32 databases have again been updated. Twenty-two of the twenty-three identification databases have been fully revised, taking into account the biochemical profiles of over 7,000 new strains (in addition to the previous profiles) and data from over 150 new publications. Today, 822 species of bacteria and yeasts can be identified, including 32 new species and 67 that have been assigned new names.INTRODUCTION
1The changes made can be broken down as follows:
•A number of new specieshave been added to the database (including both entirely new species and others added on the basis of new results). • Certain bacterial species have been deleteddue to more stringent criteria. Certain rare species which are not sufficiently studied have been removed from the database. • The names of certain species have been changedto follow modifications in the bacterial taxonomy as officially described in the International Journal of Systematic andEvolutionary Microbiology.
• Notes have been revisedto reflect the changes in names and the species added and deleted. • Percentages and performanceshave been altered to reflect variations observed in the profiles analyzed as the database was revised. • Additional testswere modified to reflect the new reference information available.WHAT'S CHANGED
IN THE DATABASES?
Version Changes ChangesDatabase number to thesaurus to database oldnewTaxons NotesIdentificationAdditional testsAPI 20 Ev 4.0v 4.1xx--
RapiD 20 Ev 3.0v 3.1
xx--API 10 Sv 3.0v 3.1
xx--API 20 NEv 6.0v 7.0
xx-xAPI STAPHv 4.0v 4.1xx--
API 20 STREPv 6.0v 7.0
xxx xAPI 20 C AUXv 3.0v 4.0xxx x
API CANDIDAv 2.0v 2.1x-- -
API 20 Av 3.0v 4.0
xxx xAPI CORYNEv 2.0v 3.0xx-x
API CAMPYv 2.0v 2.1x-- -
API LISTERIAv 1.1v 1.2
x-- -API NHv 2.0v 3.0
xxx xAPI 50 CHBv 3.0v 4.0xxx x
API 50 CHEv 3.0v 3.1xx--
API 50 CHLv 5.0v 5.1
x-- -ID 32 Ev 2.0v 3.0
xxx x rapid ID 32 Ev 3.0v 3.1xx--ID 32 GNv 3.0v 3.1
xx--ID 32 STAPHv 2.0v 2.1
x-- - rapid ID 32 v 2.0v 3.0 xxx x STREPID 32 Cv 2.0v 3.0
xxx x rapid ID 32 Av 3.1v 3.2xx-- 3SPECIES IDENTIFIABLE
BY THE VARIOUS
IDENTIFICATION SYSTEMS
API 20 EGram-negative bacilli
API 10 SGram-negative bacilli
Rapid 20EEnterobacteriaceae
API 20 NEGram-negative non-Enterobacteriaceae
API StaphStaphylococci
API 20 StrepStreptococci
API CandidaYeasts
API 20 C AUXYeasts
API 20 AAnaerobes
API CoryneCorynebacteria
API CampyCampylobacter
API ListeriaListeria
API NHNeisseria, Haemophilus
API 50 CHEEnterobacteriaceae
API 50 CHLLactic bacteria
API 50 CHBBacillus
ID 32 EGram-negative bacilli
Rapid ID 32 EEnterobacteriaceae
ID 32 GNGram-negative bacilli
ID 32 STAPHStaphylococci
Rapid ID 32 STREPStreptococci
ID 32 CYeasts
Rapid ID 32 AAnaerobes
5 changed taxonomyformer taxonomy new species species described below••• species present in database species identifiable with additional tests Abiotrophia defectiva Achromobacter denitrificansAlcaligenes denitrificans Achromobacter xylosoxidansAlcaligenes xylosoxidansAcinetobacter baumannii
Acinetobacter baumannii/calcoaceticus
Acinetobacter calcoaceticus
Acinetobacter haemolyticus
Acinetobacter johnsonii
Acinetobacter junii
Acinetobacter junii/johnsonii
Acinetobacter lwoffii
Acinetobacter radioresistens
Acinetobacter spp
Acinetobacter/Moraxella spp
Acinetobacter/Pseudomonas spp
Actinobacillus pleuropneumoniae •••Actinomyces israelii
Actinomyces meyeri
Actinomyces meyeri/odontolyticus
Actinomyces naeslundii
Actinomyces neuii sspanitratus
Actinomyces neuii sspneuii
Actinomyces odontolyticus
Actinomyces radingae
Actinomyces turicensis
Actinomyces viscosus
Aerococcus urinae •••
Aerococcus viridans
Aeromonas caviae
Aeromonas hydrophila
Aeromonas hydrophila/caviae
Aeromonas hydrophila/caviae/sobriaAeromonas hydrophila groupAeromonas salmonicida masoucida/achromogenes
Aeromonas salmonicida sspachromogenes
Aeromonas salmonicida sspmasoucida
Aeromonas salmonicida sspsalmonicida
Aeromonas sobria
Alcaligenes faecalis
Alcaligenes spp
Alloiococcus otitis
Anaerobiospirillum succiniciproducens
Anaerococcus prevotiiPeptostreptococcus prevotii
Aneurinibacillus aneurinilyticus
Arcanobacterium bernardiae
Arcanobacterium haemolyticum
Arcanobacterium pyogenes
Arcobacter cryaerophilus
API 20 E
API 10 S
Rapid 20 E
API 20 NE
T T T T T T TAPI Staph
API 20 Strep
API Candida
API 20 C AUX
API 20 A
API Coryne
API Campy
API Listeria
API NH
API 50 CHE
API 50 CHL
API 50 CHB
ID 32 E
Rapid ID 32 E
ID 32 GN
ID 32 Staph
Rapid ID 32 Strep
ID 32 C
Rapid ID 32 A
T TT T T T T T T T T T T T T T T T T 7API 20 E
API 10 S
Rapid 20 E
API 20 NE
API Staph
API 20 Strep
API Candida
API 20 C AUX
API 20 A
API Coryne
API Campy
API Listeria
API NH
API 50 CHE
API 50 CHL
API 50 CHB
ID 32 E
Rapid ID 32 E
ID 32 GN
ID 32 Staph
Rapid ID 32 Strep
ID 32 C
Rapid ID 32 A
Arthrobacter spp
Bacillus amyloliquefaciens
Bacillus anthracis
Bacillus badius
Bacillus cereus
Bacillus circulans
Bacillus coagulans
Bacillus firmus
Bacillus fusiformis
Bacillus lentus
Bacillus licheniformis
Bacillus megaterium
Bacillus mycoides
Bacillus non reactive
Bacillus pumilus
Bacillus smithii
Bacillus sphaericus
Bacillus subtilis
Bacillus subtilis/amyloliquefaciens
Bacillus thuringiensis
Bacteroides caccae
Bacteroides capillosus
Bacteroides distasonis
Bacteroides eggerthii
Bacteroides fragilis
Bacteroides merdae
Bacteroides ovatus
Bacteroides ovatus/thetaiotaomicron
Bacteroides stercoris
Bacteroides stercoris/eggerthii
Bacteroides thetaiotaomicron
Bacteroides uniformis
Bacteroides ureolyticus
Bacteroides vulgatus
Bergeyella zoohelcum
Bifidobacterium adolescentis
Bifidobacterium bifidum
Bifidobacterium breve
Bifidobacterium dentium
Bifidobacterium longumBifidobacterium infantis
Bifidobacterium spp
Bordetella avium
Bordetella bronchiseptica
Bordetella spp
Bordetella/Alcaligenes/Moraxella spp
Brevibacillus agri
Brevibacillus borstelensis
T T T T T T T T T T TT T T T T T T T T 9 changed taxonomyformer taxonomy new species species described below••• species present in database species identifiable with additional tests TAPI 20 E
API 10 S
Rapid 20 E
API 20 NE
API Staph
API 20 Strep
API Candida
API 20 C AUX
API 20 A
API Coryne
API Campy
API Listeria
API NH
API 50 CHE
API 50 CHL
API 50 CHB
ID 32 E
Rapid ID 32 E
ID 32 GN
ID 32 Staph
Rapid ID 32 Strep
ID 32 C
Rapid ID 32 A
Brevibacillus brevis
Brevibacillus centrosporus
Brevibacillus choshinensis
Brevibacillus laterosporus
Brevibacillus non reactive
Brevibacterium casei
Brevibacterium epidermidis
Brevibacterium spp
Brevundimonas diminuta
Brevundimonas diminuta/Oligella urethralis
Brevundimonas vesicularis
Brochothrix thermosphacta
Brucella spp
Budvicia aquatica
Burkholderia cepacia
Burkholderia gladioli
Burkholderia pseudomallei
Buttiauxella agrestis
Campylobacter coli
Campylobacter fetus sspfetus
Campylobacter fetus sspvenerealis
Campylobacter hyointestinalis
Campylobacter jejuni sspdoylei
Campylobacter jejuni sspjejuni
Campylobacter lari
Campylobacter lari UPTC"Campylobacter lari sspUPTC"Campylobacter mucosalis
Campylobacter sputorum bv Fecalis"Campylobacter sputorum Fecalis"Campylobacter sputorum sspbubulus
Campylobacter upsaliensis
Candida albicans
Candida boidinii
Candida catenulata
Candida colliculosa
Candida dattila
Candida dubliniensis
Candida famata
Candida glabrata
Candida globosa
Candida guilliermondii
Candida hellenica
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