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BioNumerics
© 201ϳ Applied Maths NV www.applied-maths.com BioNumerics installation guideContents
1 32-bit or 64-bit installation
32 Introduction5
2.1 Purpose
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 52.2 Target audience
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 52.3 Overview
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 53 System requirements
73.1 Hardware requirements
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 73.1.1 Minimum hardware requirements
. . . . . . . . . . . . . . . . . . . . . . . . . . 73.1.2 Recommended hardware configuration
. . . . . . . . . . . . . . . . . . . . . . . 73.2 Operating system
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 83.3 Microsoft .NET Framework 2.0 SP2
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . 93.4 Microsoft .NET Framework 3.5 SP1
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . 93.5 Microsoft Visual C++ 2012 Redistributable
. . . . . . . . . . . . . . . . . . . . . . . . . 93.6 Permissions
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 93.7 Security software
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 93.7.1 Anti-Virus
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 93.7.2 Firewall and proxy servers
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 104 Installation procedure
134.1 Installing a new BioNumerics instance
. . . . . . . . . . . . . . . . . . . . . . . . . . . 134.1.1 Prerequisites
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 134.1.2 Existing instances detected
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . 144.1.3 Welcome dialog
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 144.1.4 Software End User License Agreement
. . . . . . . . . . . . . . . . . . . . . . . 144.1.5 Customer information
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 154.1.6 Setup Type
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 164.1.7 Choose destination location
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . 164.1.8 Select features
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 174.1.9 NetKey+ connection settings
. . . . . . . . . . . . . . . . . . . . . . . . . . . . 184.1.10 Confirm installation
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 194.1.11 NetKey+ configuration
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 204.1.12 Setup INI XML file
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 204.2 Updating a BioNumerics instance
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 204.2.1 Welcome dialog
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 204.2.2 Software End User License Agreement
. . . . . . . . . . . . . . . . . . . . . . . 214.2.3 Customer information
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 214.2.4 Choose destination location
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . 224.2.5 Select features
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 234.2.6 NetKey+ connection settings
. . . . . . . . . . . . . . . . . . . . . . . . . . . . 254.2.7 Confirm update
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 254.3 Maintenance installation
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 26 iii4.3.1 Select instance to maintain. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 26
4.3.2 Maintenance options
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 264.3.3 Modify maintenance mode
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . 264.3.4 Repair maintenance mode
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 284.3.5 Remove maintenance mode
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . 284.4 Installing Protection Keys
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 294.4.1 Protection Key Types
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 294.4.2 Install Protection Key Driver
. . . . . . . . . . . . . . . . . . . . . . . . . . . . 294.4.3 Activate Sentinel HASP SL key
. . . . . . . . . . . . . . . . . . . . . . . . . . . 304.5 Setup log
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 374.6 Silent installation
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 374.6.1 Purpose
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 374.6.2 Procedure
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 374.6.3 Setup INI XML file format
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . 394.7 Silent un-installation
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 404.7.1 Purpose
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 404.7.2 Procedure
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 405 NetKey+ configuration
435.1 Introduction
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 435.2 Installing and starting the NetKey+ service on the server
. . . . . . . . . . . . . . . . . . 435.3 Configuring licenses
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 475.4 Running sessions on the clients
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 515.5 Monitoring sessions
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 515.6 Logging data
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 535.7 Resetting the NetKey+ settings
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 545.8 Repairing the NetKey+ service
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 555.9 Overview of configuration rights
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 555.10 Usage statistics
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 565.10.1 Usage information parse tool
. . . . . . . . . . . . . . . . . . . . . . . . . . . . 565.10.2 Example
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 576 Installation process
616.1 Overview
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 616.2 Setup dialog list
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 616.3 Setup processes
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 616.3.1 Read command line options
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . 616.3.2 Read global variables
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 626.3.3 Write global variables
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 626.3.4 Save Setup INI XML file
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 626.3.5 Read requested features
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 626.3.6 Save Setup Log
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 636.3.7 OnMoveData
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 636.3.8 Feature functions
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 636.4 Setup Process list
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 667 Command line options
697.1 Running BioNumerics from the command line
. . . . . . . . . . . . . . . . . . . . . . . 697.2 Running the startup program from the command line
. . . . . . . . . . . . . . . . . . . . 708 Granting access to BioNumerics databases
73iv NOTES
SUPPORT BY APPLIED MATHS
While the best efforts have been made in preparing this manuscript, no liability is assumed by the authors
with respect to the use of the information provided.Applied Maths will provide support to research laboratories in developing new and highly specialized ap-
plications, as well as to diagnostic laboratories where speed, efficiency and continuity are of primary impor-
tance. Our software thanks its current status for a part to the response of many customers worldwide. Please
contact us if you have any problems or questions concerning the use of BioNumerics R , or suggestions for improvement, refinement or extension of the software to your specific applications:Applied Maths NV Applied Maths, Inc.
Keistraat 120 11940 Jollyville Road, Suite 115N
9830 Sint-Martens-Latem Austin, Texas 78759
Belgium U.S.A.
PHONE: +32 9 2222 100 PHONE: +1 512-482-9700
FAX: +32 9 2222 102 FAX: +1 512-482-9708
E-MAIL: info@applied-maths.com E-MAIL: info-US@applied-maths.comURL:http://www.applied-maths.com
LIMITATIONS ON USE
The BioNumerics
R software, its plugin tools and their accompanying guides are subject to the terms andconditions outlined in the License Agreement. The support, entitlement to upgrades and the right to use
the software automatically terminate if the user fails to comply with any of the statements of the License
Agreement. No part of this guide may be reproduced by any means without prior written permission of the
authors.Copyright
c1998, 2017, Applied Maths NV. All rights reserved.
BioNumerics
R is a registered trademark of Applied Maths NV. All other product names or trademarks are the property of their respective owners. 2BioNumerics
R uses following third-party software tools and libraries:The PythonR
2.7.4 release from the Python Software Foundation (http://www.python.org/).
A library for XML input and output from the Apache Software Foundation (http://www.apache. org). NCBI toolkit version 2.2.10 (http://www.ncbi.nlm.nih.gov/BLAST/).The Boost c++ libraries (http://www.boost.org/).
Samtools for interacting with SAM / BAM files (http://www.htslib.org/download/) The 7-Zip command line version (7za.exe) from 7-Zip, copyright 1999-2010 Igor Pavlov.http: //www.7-zip.org/quotesdbs_dbs14.pdfusesText_20[PDF] 7zip silent install sccm
[PDF] 7zip split files command line windows
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