[PDF] Publication quality figures using matlab: Why I do as much as





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High-Quality Figures in MATLAB1

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Preparing Figures in Matlab and LaTeX for Quality Publications

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[PDF] High-Quality Figures in MATLAB1

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  • How do I get high quality figures in MATLAB?

    To save a figure as an image at a specific resolution, call the exportgraphics function, and specify the 'Resolution' name-value pair argument. By default, images are saved at 150 dots per inch (DPI). For example, create a bar chart and get the current figure. Then save the figure as a 300-DPI PNG file.

  • How do I save a MATLAB figure as a PDF?

    Direct link to this question

    1 saving from the file menu of the figure using saveas PDF.2 guided export through the figure export menu (selecting painters, as opposed to openGL)3 using print with the -dpdf argument. Theme. print(['filename.pdf'],'-dpdf','-bestfit')4 using the saveas function.
  • The Encapsulated PostScript (EPS) vector format is the most reliable and consistent file format MATLAB supports. It is widely recognized in desktop publishing and word processing packages on both UNIX and Windows. EPS is the only MATLAB-supported export format that can produce CMYK output.

Publication quality gures using matlab:

Why I do as much as possible within matlab

Richard E. Turner (rt60@nyu.edu)

Umesh Rajashekar

June 7th, 2011

My Desiderata

Produce gure for a paper (e.g. for latex)

Fonts, line widths, etc. to be a specied size (e.g. 12pts)

Fonts and symbols identical in gure and text

Automate process as much as possible: gure regeneration common {Collect additional data {Tweak simulations {Reuse the gure in a new publication, talk, grant etc. {Minor cosmetic alterations (require small amount of work)

Reuse visualisation code

My Approach

Don't

Export gures using the \export" menu function

Modify gure properties using the mouse

Avoid Using third party graphics manipulation programs where possible Do Use functions and scripts to generate plots:Reuseability Specify fonts, line styles, axis positions, gure sizes as variables:Modiability

Export using the print command:Controllability

Which format? Vector versus raster graphics

vector graphicsorline artraster graphicsorbitmapFormatobject propertiespixel values Resolution limited byscreen/printerimage pixel size

File size for line artsmalllarge

File size for imagesmassivelarge

Editingillustrator, inkscape, intagliophotoshop, gimp

File formatseps, pdf, emfpng, jpeg, emf

Conclusion: Export line art components in EPS or PDF

Demonstrations: Focus on exporting

demoFig.mprogressively improves a simple gure in matlab for demo purposes.

The outputs are collected into the pdfdemoFig.pdf

Plot1By1.m,Plot1By2.metc. are shells of functions that I make a copy of and ll in when making a new gure

PSfrag - Latex symbols in gures

Latex method for replacing text in eps les with latex text Add the psfrag package to the latex document and use: \psfrag{text in eps to replace}[l][l]{text in latex to use} TIP: to nd the exact text string in the eps le, open it in a text editor and search for it. http://en.wikipedia.org/wiki/PSfrag

Other useful functions and information

exportfig.m export_fig.m These are two functions that handle exporting in a more WYSIWYG manner, also taking care to export properly. I prefer my method as it is more explicit and gives me more control. But these methods may be better for gures containing mixtures of bitmap and vector components. basic beautication of gures: Other useful plotting functions and options in matlab patch.m - 2D polygon plotting, useful for plotting error bars plotyy.m - dierent y axes on each side of the plot annotation.m - add arrows, textboxes etc. to your gure legend.m, nudgeLegend.m - add legend to a plot, and tweak its appearance (my code) set(gca,'box','off') - turns the gure bounding box o set(gca,'layer','top') - bring the axis to the top to stop stu being plotted over the black edges and tick marks set(gca,'TickDir','out') - set the direction of the tick marks to point outwards pu = get(gcf,'PaperUnits'); pp = get(gcf,'PaperPosition'); set(gcf,'Units',pu,'Position',pp) To set the screen size to be the same as the papersize - more WYSIWYG for mixtures of vector and bitmaped graphics - export each part separately and overlay e.g. within latex itself transparent background in eps le - comment out lines in the eps le that read: "X X X PR" or "X X X X MP", where X is some number. Latex trick: use the layout package to nd out how wide the page is for setting gure dimensions.quotesdbs_dbs17.pdfusesText_23
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