Crystallography phase problem

  • How do you overcome phase problems in crystallography?

    The most common approach to this problem has been multiple isomorphous replacement (MIR) (Green et al., 1954).
    Figure 3 Each reflection in the diffraction pattern can be described as a wave with a certain magnitude and phase..

  • How do you solve phase problems in crystallography?

    A powerful solution is the multi-wavelength anomalous dispersion (MAD) method.
    In this technique, atoms' inner electrons absorb X-rays of particular wavelengths, and reemit the X-rays after a delay, inducing a phase shift in all of the reflections, known as the anomalous dispersion effect..

  • How does Mir solve the phase problem?

    Multiple isomorphous replacement (MIR) is historically the most common approach to solving the phase problem in X-ray crystallography studies of proteins.
    For protein crystals this method is conducted by soaking the crystal of a sample to be analyzed with a heavy atom solution or co-crystallization with the heavy atom..

  • What are the phasing methods in crystallography?

    There are three commonly used phasing methods: isomorphous replacement, anomalous dispersion techniques, and molecular replacement.
    The first two are experimental phasing methods, since no prior structural knowledge of the macromolecule is required..

  • What is a phase in protein crystallography?

    For the majority of cases in protein crystallography phases are derived either by using the atomic coordinates of a structurally similar protein (molecular replacement) or by finding the positions of heavy atoms that are intrinsic to the protein or that have been added (methods such as MIR, MIRAS, SIR, SIRAS, MAD, SAD .

  • What is phase in diffraction?

    A phase is a crystalline solid with a regular 3-dimensional arrangement of the atoms.
    The measured diffraction peak positions and intensities are like a fingerprint of a particular crystalline phase..

  • What is the phase problem in electron microscopy?

    The phase problem in electron microscopy is the determination of phase angles from a set of image (or diffraction) plane intensity measurements; with this information we should be in a better position to interpret an image in terms of the specimen structure..

  • What is the phase problem?

    From these intensities we derive the amplitudes of the scattered waves, but in the experiment we lose the phase information; that is, how we offset these waves when we add them together to reconstruct an image of our molecule.
    This is generally known as the 'phase problem'..

  • Multiple isomorphous replacement (MIR) is historically the most common approach to solving the phase problem in X-ray crystallography studies of proteins.
    For protein crystals this method is conducted by soaking the crystal of a sample to be analyzed with a heavy atom solution or co-crystallization with the heavy atom.
  • The term 'phase problem in optics' is closely related to the concept of 'lensless optics'.
    In both cases, a problem arises that was initially formulated as the retrieval of the phase of a wave field produced by a laser beam by measuring its modulus in two parallel planes: of the object and of the detector.
  • There are three commonly used phasing methods: isomorphous replacement, anomalous dispersion techniques, and molecular replacement.
    The first two are experimental phasing methods, since no prior structural knowledge of the macromolecule is required.
In physics, the phase problem is the problem of loss of information concerning the phase that can occur when making a physical measurement. The name comes from the field of X-ray crystallography, where the phase problem has to be solved for the determination of a structure from diffraction data.
When X-rays are "shot" at a sample, the resultant waves (with characteristic wavelenghth, amplitude, and phase) are due to the interaction between the incident ray and the crystal structure (X-ray scattering). X-ray diffraction results when there is constructive interference between scattered rays.

Overview

Light detectors, such as photographic plates or CCDs, measure only the intensity of the light that hits them

Phase retrieval

There are several ways to retrieve the lost phases. The phase problem must be solved in x-ray crystallography, neutron crystallography

Phase improvement

In many cases, an initial set of phases are determined, and the electron density map for the diffraction pattern is calculated

See also

• Coherent diffraction imaging• Ptychography• Phase

External links

• An example of phase bias• An appropriate use of 'molecular

In the beginning

Issue in determining wave cycle part

In physics, the phase problem is the problem of loss of information concerning the phase that can occur when making a physical measurement.
The name comes from the field of X-ray crystallography, where the phase problem has to be solved for the determination of a structure from diffraction data.
The phase problem is also met in the fields of imaging and signal processing.
Various approaches of phase retrieval have been developed over the years.

Algorithmic determination of wave cycle parts


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