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Institut Cancer et Immunology (ICI), Aix-Marseille University (AMU) ICI-CIVIS International Summer School in Immunology-Oncology 2021

Tumor and Immunological Heterogeneity

ICI-CIVIS Summer School 2021 - ͞Tumor heterogeneity in immuno-oncology͗ single-cell approaches" - Aidž-Marseille Uniǀersity, 5-10ͬ07ͬ2021

Research lecture08:15-

09:45

08:30-

09:30 Introduction to the Bioinformatics & Mathematics behind the single-cell RNA-seq data analysis

08:30-

09:30Introduction to mass, flow and spectral spectrometry

Theoretical course3.0 Lionel Spinelli / Sabrina Baaklini (CIML, France)

4.1 Hervé Luche (CIPHE, France)

Practical workshop / Student presentation09:30-

09:45Break09:35-

10:50

Announcement / Social09:45-

11:15Workshop:

9:00-

10:003D high resolution microscopy: challenges and solutions

09:45-

10:00BreakExploring single-cell RNA-seq datasets (Group A)

10:50-

11:00Break5.1 Simon Merz (Miltenyi Biotec, France)

10:00 -

12:00Registration and Orientation

10:00-

11:25 Using single-cell RNA-seq to decipher temporal programs in tumors

11:05-

12:20Translational research lecture10:00-

11:005.2 Philippe Bousso (Institut Pasteur, France)Hugues Lelouard (CIML)

Serge van de Pavert (CIML

Hexagone

2.2 Cédric Maurange (IBDM, France)11:15-

12:45Workshop:

11:00

11:20Break

11:30 12:45

Single cell approaches in tumor and immunological

heterogeneityExploring single-cell RNA-seq datasets (Group B)

4.3 Horia Bumbea (UMFCD,

Romania)11:20-

12:20

5.3 Anne Rios (Princess Maxima Center, The Nederlands)

2.2bis Jérôme Galon (CRC, France)12:20

13:20

5.3bis Ali Ertürk, iTERM Helmholtz, Germany

12:45-

13:50Lunch

12:45-

13:45Lunch

Stéphanie Bernard (AMU)

Aitor Gonzalez (TAGC)

Sandrine Roulland (CIML)

12:45-

13:45Lunch

Stéphanie Bernard (AMU)

Marie-dominique Franco (AMU)

Fanny Mann (IBDM)

12:30-

13:30Lunch

Stéphanie Bernard (AMU)

Marie-dominique Franco (AMU)

Fanny Mann (IBDM)

13:30-

14:30Lunch

Stéphanie Bernard (AMU)

Marie-dominique Franco (AMU)

Fanny Mann (IBDM)

Workshop

13:50-

14:001.1 Summer School Kick-off - Fanny Mann (IBDM, France)14:00-

15:10

14:00-

15:10Translational research lecture13:30-

14:40

14:35-

18:30

14:00-

15:001.1 Jude Fitzgibbon (Cancer Research Barts Centre, UK)3.1 Sabrina Carpentier (Innate Pharma, France)

15:05-

16:051.2 Anne-Sophie Chretien (CRCM, France)15:15-

16:30

15:15-

16:30Translational research lecture14:45-

16:004.5 Mikaël Roussel (MICMAC, France)

16:10-

16h30Break3.2 Regis Costello (AP-HM, France)16:00-

16:15Break

16h30-

17:301.3 Christophe Caux (CRCL, France)Workshop16:30-

17:00Break16:20-

17:304.6 Vincent Detours (IRIBHM-ULB, Belgium)

17:35-

18:40

16:40-

19:00

17:00-

18:15

17:35-

18:504.7 Theodore Alexandrov (EMBL Heidelberg, Germany)

18:45-

19:00Break18:30-

19:00Break18:50-

19:00Break18:30-

18:45

5.4 Closing - Fanny Mann (IBDM, France)

19:00-

20:00

19:00-

20:00

19:00-

20:00

19:00-

20:00

18:45-

20:15

20:30-

21:30DinerPierre Milpied (CIML)

Philippe Naquet (CIML)

20:30-

21:30DinerCédric Maurange (IBDM)

Philippe Naquet (CIML)

20:30-

21:30DinerMarie-dominique Franco (AMU)

Fanny Mann (IBDM)

20:30-

21:30DinerMarie-dominique Franco (AMU)

Fanny Mann (IBDM)

20:30-

21:30Diner20:30-

21:30Diner

Visit of the Parc national des

Calanques

(Hike or Boat)

Social / Free time

5.4 Article presentations by MS students & roundtable discussions

Introduction to single-cell RNA-seq: How does it work &

What can we learn?

Spatially resolved single cell analysis I

Spatially resolved single cell analysis II

Depart Luminy: 6:30 am

Testing: 7:00 am to 8:00 am

Depart IHU: 8:30 am

CytometryTravel to the hospital IHU - Covid PCR Test (OPTIONAL)Analysis Workshop

Monday, July 5Tuesday, July 6

Single cell sequencing

Wednesday, July 7Thursday, July 8Friday, July 9Saturday, July 10

Introduction to tumor heterogeneity

Article preparation

(MS students)

Article preparation

(MS students)

Article preparation

(MS students)

Article preparation

(MS students)

3.3 Miriam Merad (Icahn Mount Sinai, USA)

2.4 Fatima Mechta-Grigoriou (Institut Curie, France)

Posters from PhD students

(Immunology-Oncology) Single cell analysis in the clinic/industrySingle cell sequencing

1.4 Lisa Derosa (Institut Gustave Roussy, France)

2.3 Ido Amit (Weismann Institute of Science, Israel)

Pierre Milpied (CIML)

Philippe Naquet (CIML)

Introduction to highly multiplexed methods for in situ analysis

4.4 Ali Tebbi and Ivan Field (Akoya Biosciences, France)

Boat:

Stéphanie Bernard (AMU)

Marie-dominique Franco (AMU)

Hike:

Philippe Naquet (CIML)

Florence Orlanducci (IPC-CRCM)

Fanny Mann (IBDM)

Pierre Milpied (CIML)

Philippe Naquet (CIML)

Sandrine Roulland (CIML)

Aitor Gonzalez (TAGC)

Sandrine Roulland (CIML)

Aitor Gonzalez (TAGC)

Cédric Maurange (IBDM)

Cédric Maurange (IBDM)

Fanny Mann (IBDM)

Philippe Naquet (CIML)

Cédric Maurange (IBDM)

Pierre Milpied (CIML)

Marc Dalod (CIML)

Sandrine Henri (CIML)

Pierre Milpied (CIML)

Cécile Vicier (IPC-CRCM)

Cécie Vicier (IPC-CRCM)

Fanny Mann (IBDM)

Rafael Arguello (CIML)

Celia Sequera Hurtado (IBDM)

Fanny Mann (IBDM)

Gratiela Pircalabioru (University of

Bucharest)

Sorina Dinescu (University of

Bucharest)

Aitor Gonzalez (TAGC)

Pierre Milpied (CIML)

Philippe Naquet (CIML)

4.2 Toby Lawrence (CIML, France / KCL, UK)2.1 Pierre Milpied (CIML, France)

Check-out is Sunday, July 11

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