[PDF] TECHNICAL RESOURCE - Strip Northern and Southern Blots





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TECHNICAL RESOURCE - Strip Northern and Southern Blots

Following exposure of a Northern or Southern blot (either by classical 17095) test for stripping efficiency by re-applying streptavidin-HRP and add ...



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[PDF] Strip Northern and Southern Blots

17095) test for stripping efficiency by re-applying streptavidin-HRP and add substrate as indicated in the protocol If no signal is detected then stripping 



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TECHNICAL RESOURCE

In the USA call: 800-8-PIERCE (800-874-3723) or 815-968-0747 • Fax: 815-968-7316 or 800-842-5007 • www.piercenet.com

1

Introduction

Following exposure of a Northern or Southern blot (either by classical isotopic methods or North2South

Chemiluminescent

Technology), researchers often wish to strip off the first probe and detecting reagents so that they may reprobe for the same

or different target. This Tech Tip describes several commonly used conditions for stripping probe from a Northern or

Southern blot while maintaining the nucleic acid target on the membrane (Table 1).

Be aware that any stripping procedure has the potential to denature sensitive nucleic acids, rendering them unrecognizable by

the probe. Should this occur, reprobing will not be possible, and a new blot will have to be prepared for each probing

experiment. Furthermore, any physical defects of a membrane will be exaggerated when stripped and reprobed.

Table 1. Possible stripping conditions for Northern and Southern blots.

Stripping Solution Strength DNA RNA Temperature & Time 0.5% SDS Mild Yes Yes 60°C for 60 minutes

5 mM Tris•HCl, pH 8.0, 2 mM EDTA,

0.1X Denhardt's Reagent Mild Yes Yes 65°C for 2 hours

50% Formamide, 2X SSPE Moderate Yes Yes 65°C for 1 hour

NaOH, 0.1% (w/v) SDS* Moderate Yes No 45°C for 30 minutes, then room temperature for 2 x 10 minutes Boiling 0.1% SDS Harsh Yes Yes Pour on 100°C solution and let cool to room temperature; repeat 2 times

0.1X SSPE or SSC/0.5% SDS Harsh Yes Yes Pour on 100°C solution and let cool to

room temperature; repeat 2 times *Blots must be neutralized in TE after stripping.

Tips for Stripping and Reprobing Blots

• Wash blots with target side up

• Handle blots only at corners

• Keep blots wet between hybridization and stripping

• Keep blots wet after stripping

• Store blots in 0.1% SDS or 1X TE at 4°C

• Stripped blots may be dried and stored at room temperature for long-term storage. However, any probe remaining on the

blot will become permanently bound once the blot is dried.

Test for Stripping Efficiency

For biotinylated probes detected using North2South Chemiluminescent Hybridization and Detection Kit (Product No.

17095), test for stripping efficiency by re-applying streptavidin-HRP and add substrate as indicated in the protocol. If no

signal is detected, then stripping was complete. If signal is detected, try a stronger stripping method.

For probes directly labeled with HRP and directly detected using North2South®

Direct HRP Labeling and Detection Kit

(Product No. 17195), add substrate as indicated in the protocol. If no signal is detected, then stripping was complete. If signal

is detected, try a stronger stripping method.

3747 N. Meridian Road

P.O. Box 117

Rockford, IL 61105

TR0028.0 Strip Northern and Southern Blots

In the USA call: 800-8-PIERCE (800-874-3723) or 815-968-0747 • Fax: 815-968-7316 or 800-842-5007 • www.piercenet.com

2

Buffer Formulations

50 X Denhardt's Reagent 20 X SSPE

5 gm Ficoll

5 gm Polyvinylpyrrolidone

5 gm BSA

Adjust volume to 500 ml 800 ml H

2 O

175.3 gm NaCl

27.6 g NaH

2 PO 4 •H 2 O pH to 7.4 with NaOH

Adjust volume to 1 L

20 X SSC TE, pH 7.4

800 ml H2O

175.3 gm NaCl

88.2 g sodium citrate

pH to 7.0 with NaOH Adjust volume to 1 L 10 mM Tris•HCl (pH 7.4)

1 mM EDTA (pH 8.0)

Related Pierce Products

77016 Biodyne

B Nylon Membranes, 25/pkg.

17095 North2South

Chemiluminescent Hybridization and Detection Kit, for use in detecting biotinylated probes

17195 North2South

Direct HRP Labeling and Detection Kit, for direct labeling of probes longer than 50 nucleotides and subsequent Northern or Southern blotting detection

89880 Chemiluminescent Nucleic Acid Detection Module

20148 LightShift

Chemiluminescent EMSA Kit

©Pierce Biotechnology, Inc., 7/2004. Printed in the USA.quotesdbs_dbs14.pdfusesText_20
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