Computational methods and theory for ion channel research

  • How do you study ion channels?

    Ion-channel function can be monitored in a number of ways; by monitoring isotope flux in isolated tissues or membrane vesicles, or by using electrophysiological techniques, such as whole cell voltage-clamp or patch-clamp..

  • How were ion channels discovered?

    In 1978, Neher and Sakmann made the practical demonstration of Katz's hypothesis thanks to the invention of the patch clamp, a technique ables to measure tiny currents in biological membranes, allowing the observation of the currents through a single ion channel (13)..

  • What an ion channel is and why they are needed?

    Thus, the function of ion channels is to allow specific inorganic ions—primarily Na+, K+, Ca2+, or Cl-—to diffuse rapidly down their electrochemical gradients across the lipid bilayer.
    As we shall see, the ability to control ion fluxes through these channels is essential for many cell functions..

  • What are the four ways to fit an ion channel model?

    Four different methods can be found in the literature to fit voltage-sensitive ion channel models to whole-cell current measurements: method 1, fitting model equations directly to time-constant, steady-state, and I-V summary curves; method 2, fitting by comparing simulated versions of these summary curves to their .

  • What method is used to study ion channel protein expression?

    Because they carry ionic current, the function and pharmacology of ion channels can be studied using electrophysiological approaches that range in resolution from the single molecule to many millions of molecules..

  • What technique is used to study ion channels?

    Patch-clamp electrophysiology is a widely used method to study ion channel activity at the single-channel or whole-cell level.
    It allows researchers to investigate the kinetics, voltage dependence, and pharmacology of ion channel function..

  • Why do we study ion channels?

    This is the process responsible for conducting the electrical signal via which the brain and the heart work.
    So ion channels are important because they control neuron excitability, which in turn controls how different parts of our bodies talk to each other and how we sense the external world..

  • Four different methods can be found in the literature to fit voltage-sensitive ion channel models to whole-cell current measurements: method 1, fitting model equations directly to time-constant, steady-state, and I-V summary curves; method 2, fitting by comparing simulated versions of these summary curves to their
  • In 1978, Neher and Sakmann made the practical demonstration of Katz's hypothesis thanks to the invention of the patch clamp, a technique ables to measure tiny currents in biological membranes, allowing the observation of the currents through a single ion channel (13).
  • Ion channel receptors are usually multimeric proteins located in the plasma membrane.
    Each of these proteins arranges itself so that it forms a passageway or pore extending from one side of the membrane to the other.
  • Selective ion channels are essential for the excitability of biological membranes: the action potential is a transient phenomenon that reflects the rapid opening and closing of voltage-dependent Na+-selective and K+-selective channels.
Here, we review recent results in the field of computational research on ion channels, covering theoretical advances, state-of-the-art simulation approaches,  GraphicalAbstractIntroductionContinuum methodsAtomistic approaches
In this method, the potential applied to the membrane is V = Q / C , where Q is the charge imbalance and C is the membrane capacitance. In this case, ions must  GraphicalAbstractIntroductionContinuum methodsAtomistic approaches

Software for simulating ionic interactions with solid matter

Stopping and Range of Ions in Matter (SRIM) is a group of computer programs which calculate interactions between ions and matter; the core of SRIM is a program called Transport of Ions in Matter (TRIM).
SRIM is popular in the ion implantation research and technology community, and also used widely in other branches of radiation material science.

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